For this course you will need to bring your own laptop.
All the PATC courses at BSC are free of charge.
Course Convener: Josep Gelpi, BSC Life Sciences - INB Computational Node 2 Group Manager
Objectives: The course will make the attendants familiar with simulation technologies used in Life Sciences and their specific adaptation to HPC environment
Detailed outline:
Introduction to biomolecular simulation
Coarse-grained and atomistic simulation strategies
Automated setup for simulation
HPC specifics: Large scale parallelization, use of GPU’s
Storage and strategies for large scale trajectory analysis
Learning Outcomes: Setup, execute, and analyze standard simulations in HPC environment
Prerequisites: Basic knowledge of structural bioinformatics Basic knowledge of parallelization strategies. Material will be provided during the course, students are welcome to provide their own use cases.
