PRACE code porting workshop in Linköping, Sweden

Oct 13, 2009, 12:00 PM → Oct 14, 2009, 6:15 PM CET

Welcome to NSC'09

13-14 October 2009

Linköping University, Campus Valla, Physics building, lecture hall Planck

PRACE Code Porting Workshop

SNIC Interaction

Topics:

• presentation of PRACE prototype systems
• examples of PRACE systems usage
• demonstrations of code porting issues
• user presentations
• 20 years of Swedish HPC

Invited speakers

• Ron Dror, D. E. Shaw Research, New York, USA
• Jesus Labarta, Barcelona Supercomputing Centre, Barcelona, Spain
• Michael Stephan, Research Centre Jülich, Jülich, Germany
• Gabriele Carteni, Barcelona Supercomputing Centre, Barcelona, Spain

Tuesday, October 13

12:00 PM → 1:00 PM Registration at the Physics building main entrance

1:00 PM → 1:10 PM Welcome and opening of the conference

Bengt Persson, NSC

1:10 PM → 1:30 PM Swedish eInfrastructure for Research: The SNIC Landscape Document for 2010-2013

Sverker Holmgren, SNIC

1:30 PM → 2:00 PM MariCel: the PRACE prototype at BSC

Gabriele Carteni, Barcelona Supercomputing Centre, Spain

2:00 PM → 2:30 PM Prototype system at FZJ (MPP, IBM BlueGene /P)

Michael Stephan, Research Centre Jülich, Germany (Cancelled)

2:30 PM → 3:00 PM Prototype system at PDC

Daniel Ahlin, PDC

3:00 PM → 3:25 PM DEISA

Erwin Laure, PDC

3:25 PM → 3:40 PM Coffee break

3:40 PM → 4:05 PM Ab-initio studies of advanced multifunctional materials

Biplab Sanyal, UPPMAX and Department of Physics and Materials Science, Uppsala University

4:05 PM → 4:30 PM Mesoscopic simulations of many-body protein interactions

Mikael Lund, Kemicentrum, Lund University

4:30 PM → 4:55 PM Whole genome resequencing reveals loci under selection during chicken domestication

Carl-Johan Rubin, Department of Medical Biochemistry and Microbiology, Uppsala University

4:55 PM → 5:20 PM Constructing error-correcting codes with huge distances

Florian Hug, Lund University

5:20 PM → 5:45 PM The GIRD Grid Job Management Framework

P-O Östberg, Department of Computing Science and HPC2N, Umeå University

Wednesday, October 14

9:00 AM → 9:50 AM Performance Tuning for Anton, a Specialized Molecular Dynamics Machine

Ron Dror, D.E. Shaw Research, New York, USA

9:50 AM → 10:20 AM High performance computing with GROMACS

Berk Hess, Stockholm University

10:20 AM → 10:40 AM Coffee break

10:40 AM → 11:10 AM Advanced profiling of GROMACS

Jesus Labarta, Barcelona Supercomputing Centre, Spain

11:10 AM → 12:10 PM Visit to NSC computer hall

12:10 PM → 1:00 PM Lunch Break

1:00 PM → 1:30 PM NSC during 20 years

Karl-Fredrik Berggren, Department of Physics, Chemistry and Biology, Linköping University

1:30 PM → 1:50 PM Perspective on aircraft design and HPC development over 20 years

Mattias Sillén, Saab Aerosystems, Linköping

1:50 PM → 2:10 PM History of the SMHI and NSC partnership

Per Undén, SMHI

2:10 PM → 2:30 PM SUNET during 20 years

Hans Wallberg, SUNET

2:30 PM → 2:55 PM HPC in Cardiovascular Medicine — the need for LES and FSI

Matts Karlsson, Department of Management and Engineering, Linköping University

2:55 PM → 3:20 PM Shape optimization and active flow control for improved aerodynamic properties

Sinisa Krajnovic, Division of Fluid Dynamics, Chalmers

3:20 PM → 3:45 PM Quantum Aspects of Surface Plasmons in Reduced Dimensions — insights from computational studies

Shiwu Gao, Department of Physics, University of Gothenburg

3:45 PM → 4:30 PM Coffee and SNUG information

4:30 PM → 4:55 PM Theory of simple and complex materials

Sergei Simak, Department of Physics, Chemistry and Biology, Linköping University

4:55 PM → 5:20 PM Computational Combinatorics and Experimental Mathematics

Klas Markström, Department of Mathematics and Mathematical Statistics, Umeå University

5:20 PM → 5:45 PM Laser-matter interactions and particle acceleration

Mattias Marklund, Department of Physics, Umeå University

5:45 PM → 6:10 PM Numerical Simulation of Turbulent Boundary-Layer Flows

Philipp Schlatter, Mechanics, KTH, Stockholm

6:10 PM → 6:15 PM Concluding remarks