PRACE code porting workshop in Linköping, Sweden

Oct 13, 2009, 12:00 PM → Oct 14, 2009, 6:15 PM CET

Welcome to NSC'09

13-14 October 2009

Linköping University, Campus Valla, Physics building, lecture hall Planck

PRACE Code Porting Workshop

SNIC Interaction

Topics:

• presentation of PRACE prototype systems
• examples of PRACE systems usage
• demonstrations of code porting issues
• user presentations
• 20 years of Swedish HPC

Invited speakers

• Ron Dror, D. E. Shaw Research, New York, USA
• Jesus Labarta, Barcelona Supercomputing Centre, Barcelona, Spain
• Michael Stephan, Research Centre Jülich, Jülich, Germany
• Gabriele Carteni, Barcelona Supercomputing Centre, Barcelona, Spain

Tuesday, October 13

Registration at the Physics building main entrance

Welcome and opening of the conference

Bengt Persson, NSC

Swedish eInfrastructure for Research: The SNIC Landscape Document for 2010-2013

Sverker Holmgren, SNIC

MariCel: the PRACE prototype at BSC

Gabriele Carteni, Barcelona Supercomputing Centre, Spain

Prototype system at FZJ (MPP, IBM BlueGene /P)

Michael Stephan, Research Centre Jülich, Germany (Cancelled)

Prototype system at PDC

Daniel Ahlin, PDC

DEISA

Erwin Laure, PDC

3:25 PM Coffee break

Ab-initio studies of advanced multifunctional materials

Biplab Sanyal, UPPMAX and Department of Physics and Materials Science, Uppsala University

Mesoscopic simulations of many-body protein interactions

Mikael Lund, Kemicentrum, Lund University

Whole genome resequencing reveals loci under selection during chicken domestication

Carl-Johan Rubin, Department of Medical Biochemistry and Microbiology, Uppsala University

Constructing error-correcting codes with huge distances

Florian Hug, Lund University

The GIRD Grid Job Management Framework

P-O Östberg, Department of Computing Science and HPC2N, Umeå University

Wednesday, October 14

Performance Tuning for Anton, a Specialized Molecular Dynamics Machine

Ron Dror, D.E. Shaw Research, New York, USA

High performance computing with GROMACS

Berk Hess, Stockholm University

10:20 AM Coffee break

Advanced profiling of GROMACS

Jesus Labarta, Barcelona Supercomputing Centre, Spain

Visit to NSC computer hall

12:10 PM Lunch Break

NSC during 20 years

Karl-Fredrik Berggren, Department of Physics, Chemistry and Biology, Linköping University

Perspective on aircraft design and HPC development over 20 years

Mattias Sillén, Saab Aerosystems, Linköping

History of the SMHI and NSC partnership

Per Undén, SMHI

SUNET during 20 years

Hans Wallberg, SUNET

HPC in Cardiovascular Medicine — the need for LES and FSI

Matts Karlsson, Department of Management and Engineering, Linköping University

Shape optimization and active flow control for improved aerodynamic properties

Sinisa Krajnovic, Division of Fluid Dynamics, Chalmers

Quantum Aspects of Surface Plasmons in Reduced Dimensions — insights from computational studies

Shiwu Gao, Department of Physics, University of Gothenburg

3:45 PM Coffee and SNUG information

Theory of simple and complex materials

Sergei Simak, Department of Physics, Chemistry and Biology, Linköping University

Computational Combinatorics and Experimental Mathematics

Klas Markström, Department of Mathematics and Mathematical Statistics, Umeå University

Laser-matter interactions and particle acceleration

Mattias Marklund, Department of Physics, Umeå University

Numerical Simulation of Turbulent Boundary-Layer Flows

Philipp Schlatter, Mechanics, KTH, Stockholm

Concluding remarks